Aside

Lijia Yu

Contact Info

Skills

  • Experienced in algorithm design and statistical learning models.

  • Full experience with next generation sequencing data analysis.

  • Highly skilled in R and Python.

Disclaimer

This resume was made with the R package pagedown.

Last updated on 2019-02-21.

Main

Hyun-Hwan Jeong

Postdoctoral Associate

I am a postdoctoral associate in Department of Molecular and Human Genetics at the Baylor College of Medicine and Jan and Dan Duncan Neurological Research Institute. I have received my Ph.D. degree in computer science from Ajou University, in August 2015, and started the postdoctoral associate position in the lab of Dr. Zhandong Liu, and co-mentored by Dr. Huda Zoghbi, since September 2015.

During the Ph.D. studies, I was highly focused on the development of integrative network analysis framework for multiple omics data using information-theoretic measure. I am now focusing on developing quantification algorithm and computational pipeline construction for NGS data for the neurological disorder.

Education

20092015

Ajou University

Ph.D. in Computer Science and Engineering Suwon, South Korea

Thesis: Integrative network analysis framework for multiple omics data using information-theoretic measure

20072009

Ajou University

M.Eng. in Information and Communication Technology Suwon, South Korea

Thesis: Missing SNP genotype imputation by heuristic algorithm

20032007

Ajou University

B.S. in Information and Computer Engineering Suwon, South Korea

Research Experience

2015Present

Postdoctoral Associate

Department of molecular and human genetics, Baylor college of medicine Houston, Texas
  • Mentor: Huda Zhogbi and Zhandong Liu
20142015

Research assistant

Health Avatar Project, National Core Research Center(NCRC) Suwon, South Korea
  • Developed an multi-omics data intergration software (MINA) integrative omics data analysis using clinical outcome-guided mutual information network.

Teaching Experience

2014
2015

C Programming

Part time Instructor of C programming at Ajou University. Suwon, South Korea
2015

Software problem solving skill training

Instructor of the training course at Ajou University. Suwon, South Korea

Selected Peer-Reviewed Publications

2018

Tau activates transposable elements in Alzheimer’s disease

Cell reports

C Guo, HH Jeong, YC Hsieh, HU Klein, DA Bennett, PL De Jager, Z Liu, …

2018

An ultra-fast and scalable quantification pipeline for transposable elements from next generation sequencing data

Pac. Symp. Biocomput

HH Jeong, HK Yalamanchili, C Guo, JM Shulman, Z Liu

2018

Metabolomics of mammalian brain reveals regional differences

BMC systems biology

WT Choi, M Tosun, HH Jeong, C Karakas, F Semerci, Z Liu, …

2018

A druggable genome screen identifies modifiers of α-synuclein levels via a tiered cross-species validation approach

Journal of Neuroscience

MWC Rousseaux, GE Vázquez-Vélez, I Al-Ramahi, HH Jeong, A Bajić, …

2018

Integrative pathway-based survival prediction utilizing the interaction between gene expression and DNA methylation in breast cancer

BMC medical genomics

SY Kim, TR Kim, HH Jeong, KA Sohn

2017

Subunit conformational variation within individual GroEL oligomers resolved by Cryo-EM

Proceedings of the National Academy of Sciences

SH Roh, CF Hryc, HH Jeong, X Fei, J Jakana, GH Lorimer, W Chiu

2017

CRISPRcloud: a secure cloud-based pipeline for CRISPR pooled screen deconvolution

Bioinformatics

HH Jeong, SY Kim, MWC Rousseaux, HY Zoghbi, Z Liu